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scottstanie gmgunter ehavazli mirzaees lyy0908 bbuzz31 kousikb taliboliver

sweets's Issues

Coherence outputs occasional pixel values above one

Noticed by me and @taliboliver , there very occasional pixels with coherence above 1

It's something with

def _take_looks_da(da: da.Array, row_looks: int, col_looks: int):
    return da.coarsen(x=col_looks, y=row_looks, boundary="trim").mean()

It's not a huge deal, but will avoid us needing to manually set the vmax when plotting coherence sometimes

Add 'slantRangeDistance' in geometryGeo.h5 for mintpy

For some workflows in Mintpy, a slant range distance is required. It would be great if this could be added while preparing the mintpy input files. Something like this in prep_mintpy.py works:

from mintpy.utils.utils0 import incidence_angle2slant_range_distance

And after incidence angle calculation:

dsDict["slantRangeDistance"] = incidence_angle2slant_range_distance(meta, incidence_angle)

Thanks.

inconsistent geometry file size

There are inconsistencies between the size of geometry files produced by sweets and the unw ifgs produced by dolphin
For example: in sweets the looks are 3*6 and that produces geometry files of the size of 270*366
while in dolphin with strides of 3*6, the unw ifgs (stitched from 2 bursts) have a size of 1074*3545

ImportError: libgdal.so.31

Hi @scottstanie ,
I installed sweets within my already existing environment with isce3, compass and dolphin. During the installation I noticed that dolphin was re-installed to a different version (See log below).

Successfully built dolphin
Installing collected packages: dolphin
  Attempting uninstall: dolphin
    Found existing installation: dolphin 0.0.3.post1.dev13+g0e7bcd7
    Uninstalling dolphin-0.0.3.post1.dev13+g0e7bcd7:
      Successfully uninstalled dolphin-0.0.3.post1.dev13+g0e7bcd7
Successfully installed dolphin-0.0.post1.dev369+gb9902e4

Installation when through without any error, however when testing sweets i get the following:

 sweets --bbox -102.3407 31.9909 -101.9407 32.3909 --start "2022-10-15" --track 78
Traceback (most recent call last):
  File "/home/cabrera/python/miniconda3/envs/opera/bin/sweets", line 8, in <module>
    sys.exit(main())
  File "/home/cabrera/python/miniconda3/envs/opera/lib/python3.9/site-packages/sweets/cli.py", line 133, in main
    from sweets.core import Workflow
  File "/home/cabrera/python/miniconda3/envs/opera/lib/python3.9/site-packages/sweets/core.py", line 19, in <module>
    from ._burst_db import get_burst_db
  File "/home/cabrera/python/miniconda3/envs/opera/lib/python3.9/site-packages/sweets/_burst_db.py", line 11, in <module>   
    from .utils import get_cache_dir
  File "/home/cabrera/python/miniconda3/envs/opera/lib/python3.9/site-packages/sweets/utils.py", line 8, in <module>
    from shapely import from_geojson, from_wkt, geometry
ImportError: cannot import name 'from_geojson' from 'shapely' (/home/cabrera/python/miniconda3/envs/opera/lib/python3.9/site-packages/shapely/__init__.py)

Also, now after the installation isce3 cannot find libgdal.so.31:

s1_geocode_stack.py -h
Traceback (most recent call last):
  File "/mnt/aurora-r0/cabrera/software/tools/COMPASS/src/compass/s1_geocode_stack.py", line 12, in <module>
    from s1reader.s1_orbit import get_orbit_file_from_dir, parse_safe_filename
  File "/mnt/aurora-r0/cabrera/software/tools/s1-reader/src/s1reader/__init__.py", line 5, in <module>
    from s1reader.s1_burst_slc import Sentinel1BurstSlc
  File "/mnt/aurora-r0/cabrera/software/tools/s1-reader/src/s1reader/s1_burst_slc.py", line 8, in <module>
    import isce3
  File "/mnt/aurora-r0/cabrera/software/tools/isce3/install/packages/isce3/__init__.py", line 2, in <module>
    from .ext import extisce3
  File "/mnt/aurora-r0/cabrera/software/tools/isce3/install/packages/isce3/ext/__init__.py", line 3, in <module>
    from . import isce3 as extisce3
ImportError: libgdal.so.31: cannot open shared object file: No such file or directory

What do you think could have been the problem?
Thanks so much in advance!

ImportError: 'group_by_date' from 'dolphin.utils'

After installing the latest sweets and installing environment packages using conda I get the following error: ImportError: cannot import name 'group_by_date' from 'dolphin.utils'. It seems that the error is due to an older version of dolphin that was installed. For reference the dolphin installed was version 0.1.1 while the current version is 0.2.0. In contrast, the version of COMPASS installed was the current one 0.4.1.

Stitching error because of nonexistent static layers after compass

Looks like the static layers generation is off by default in compass and stitching step throughs an error when it does not find the files.
here is the error:

 File "/home/smirzaee/new_setup/mambaforge/envs/opera/lib/python3.11/site-packages/sweets/core.py", line 351, in _stitch_geometry
    stitching.merge_images(
  File "/home/smirzaee/new_setup/mambaforge/envs/opera/lib/python3.11/site-packages/dolphin/stitching.py", line 186, in merge_images
    projection = _get_mode_projection(file_list)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/smirzaee/new_setup/mambaforge/envs/opera/lib/python3.11/site-packages/dolphin/stitching.py", line 376, in _get_mode_projection
    return max(set(projs), key=projs.count)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: max() arg is an empty sequence

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