Comments (1)
I am closing this issue. The error message indicated that the index was not readable. This was the case, because the index file URL on an S3 bucket was not set with public read permissions.
There is also an issue with Call variants having different results that I will open in a separate issue.
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Related Issues (20)
- Annotate variants with Include gnomad V4, AlphaMissense, etc
- Refresh clinvar
- Use d3 forcelayout for variant pileup
- When app is launched from Mosaic, alert user with error if required file (vcf/tbi) are not found for given sample(s)
- When app launched from Mosaic, check for file conflicts when launching apps (e.g. multiple bam files exist) when experiment_id not provided
- Typeahead gene list is consuming huge amount of heap (allGenes, allKnownGenes) HOT 1
- Memory leaks in vue_pileup component
- Unhandled exceptions due to incorrect name in error handling HOT 1
- If gene.iobio is launched from Mosaic w/o a gene specified, the left side panel should open, once a gene has been entered.
- When a new gene is added from search or gene list on nav bar, show genes tab and select the gene
- Variant interpretation and notes lost when switching from gencode<->refseq
- Order gene list on similarity to entered term (not alphabetically) HOT 2
- Ensure ClinVar is filtering out significance terms HOT 2
- Bypassing unknown genes stops analysis? HOT 1
- When gene is launched from Mosaic, warn user when required files not present
- Handle new Mosaic variant annotation field name with version (e.g. fieldName_XXXXX@version)
- When gene added from gene search, don't go to variant's tab unless a variant for the added gene is added
- Annotate variants with SpliceAI, CADD, Mutscore, Alphamissense, Eve
- Send file paths to Anders
- Test with gnomAD and ClinVar annotations (edit TOML)
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