Related Issues (20)
- Annotate variants with Include gnomad V4, AlphaMissense, etc
- Refresh clinvar
- Use d3 forcelayout for variant pileup
- When app is launched from Mosaic, alert user with error if required file (vcf/tbi) are not found for given sample(s)
- When app launched from Mosaic, check for file conflicts when launching apps (e.g. multiple bam files exist) when experiment_id not provided
- Typeahead gene list is consuming huge amount of heap (allGenes, allKnownGenes) HOT 1
- Memory leaks in vue_pileup component
- Unhandled exceptions due to incorrect name in error handling HOT 1
- When a new gene is added from search or gene list on nav bar, show genes tab and select the gene
- Variant interpretation and notes lost when switching from gencode<->refseq
- Order gene list on similarity to entered term (not alphabetically) HOT 2
- Ensure ClinVar is filtering out significance terms HOT 2
- Bypassing unknown genes stops analysis? HOT 1
- When gene is launched from Mosaic, warn user when required files not present
- Handle new Mosaic variant annotation field name with version (e.g. fieldName_XXXXX@version)
- When gene added from gene search, don't go to variant's tab unless a variant for the added gene is added
- Annotate variants with SpliceAI, CADD, Mutscore, Alphamissense, Eve
- Send file paths to Anders
- Test with gnomAD and ClinVar annotations (edit TOML)
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