Comments (1)
This was happening due to code that was setting VariantInspectCard.selectedVariantInfo
in annotateClinvarVariant()
, which occurred when user clicked on a ClinVar variant in the ClinVar track. There are two problems with this code:
- The wrong variable was being initialized (in
VariantInspect.refreshedSelectedVariantInfo()
). The code should have been setting the variable this.info, not this.selectedVariantInfo, which is the new field introduced with #846.this.selectedVariantInfo
contains the checked annotations from the new dialogSelectVariantAnnotationsDialog
. - This refresh wasn't needed in the first place. The property
info
is passed in from GeneHome, which contains the variant info formatted when a variant is selected.
from gene.iobio.
Related Issues (20)
- Annotate variants with Include gnomad V4, AlphaMissense, etc
- Refresh clinvar
- Use d3 forcelayout for variant pileup
- When app is launched from Mosaic, alert user with error if required file (vcf/tbi) are not found for given sample(s)
- When app launched from Mosaic, check for file conflicts when launching apps (e.g. multiple bam files exist) when experiment_id not provided
- Typeahead gene list is consuming huge amount of heap (allGenes, allKnownGenes) HOT 1
- Memory leaks in vue_pileup component
- Unhandled exceptions due to incorrect name in error handling HOT 1
- If gene.iobio is launched from Mosaic w/o a gene specified, the left side panel should open, once a gene has been entered.
- When a new gene is added from search or gene list on nav bar, show genes tab and select the gene
- Variant interpretation and notes lost when switching from gencode<->refseq
- Order gene list on similarity to entered term (not alphabetically) HOT 2
- Ensure ClinVar is filtering out significance terms HOT 2
- Bypassing unknown genes stops analysis? HOT 1
- When gene is launched from Mosaic, warn user when required files not present
- Handle new Mosaic variant annotation field name with version (e.g. fieldName_XXXXX@version)
- When gene added from gene search, don't go to variant's tab unless a variant for the added gene is added
- Annotate variants with SpliceAI, CADD, Mutscore, Alphamissense, Eve
- Send file paths to Anders
- Test with gnomAD and ClinVar annotations (edit TOML)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gene.iobio.