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iobio-launch

Frontend library for managing things like the backend whitelist.

iobio-log-server

iobio.js

Client side iobio library for building and executing iobio commands

iobio.viz

Visualization and charting JS library for streaming genomic data

minion

Server wrapper that turns command line tools into web services

minion-services

A repo for holding all iobio web service definition files

multialign

A service to show multiway alignments from UCSC multiway fasta files.

onc.iobio

oncology-specific clin.iobio suite

oncogene

Cancer tailored version of gene.iobio

oncologist

Precision oncology drug screening tool

patient_portal

This is a patient portal project for Calypso and UDN

pheno-plus

SMART on FHIR EMR project for retrieving Human Phenotype Ontology terms directly from medical record notes.

pheno-plus-whitelist

A background service that keeps a whitelist json for our pheno+ applicaiton up to date. This is a service for testing only.

phenomatcher

iobio version of phenomatcher tool

phenotype-extractor

Extract phenotypes/ conditions from clinical notes

phenotype-extractor-vue

A library for "select phenotypes" feature of clin.iobio

pheno_matcher_be_rust

Backend for the SimPheny project. Implemented in Rust for speed.

planning

qual.iobio.io

quarantest-dockerfiles

rna.iobio

rnasplice.iobio

Visualize short-read RNA splice events

simpheny.iobio

A web application for patient to patient phenotype matching.

summarize_coverage

Python script to summarize mpileup while retaining coverage at specific points for variants

sv.iobio

structural variant visualization application

sv.iobio.be

Backend services for testing & stand alone service to sv.iobio

taxonomer.iobio

timeline

vcf.iobio.io

vcfreaddepther

Estimate variant density by reading index in tabix file.