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gromacs-conda

Conda Gromacs recipe

gromacs_ff

Trusted force field files for gromacs

hi-c_analysis_examples

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

histonedb

histoneppidb

hydroid

Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes

hydroid-conda

HYDROID recipe for Anaconda

hydroid_gui

GUI for HYDROID - Python package for analyzing hydroxyl-radical footprinting experiments of protein-DNA complexes (https://github.com/ncbi/HYDROID)

intbio.github.io

intbioedu

Educational notes on Integrative Biology: computer science/data analysis/physics for biologists and biology for students with technical backgounds.

it_notes

Information technology notes and code snippets useful for computational biology.

kosarim_et_al_2022

Supplement to the article "Analysis of ion atmosphere around nucleosomes using supercomputer MD simulations"

kovalev_practice

latex-thesis-template-msu

LaTeX-template for russian Phd thesis

mm_2024

mm_hse_2023

molmodedu

Educational Notes on Molecular Modeling

moscow_igem2020

Kinetic model of the detection system with CasX

msa

Modular BioJS compoment for a multiple sequence alignment

nucllego

Nucleosome LEGO project

nwunsch

oleinikov_et_al_2023

Supplementary material

plumed-conda

A recipe to make a PLUMED package for conda

pymolint

A python package to characterise molecular interactions at atomic level in PDB structures and MD simulations

pynamod

The aim of this project is to provide a set of python tools to perform modelling of various DNA structures

pynucl

A library for comprehensive analysis of nucleosome structures

pypkg_example

This is an example of creating and developing a python package, deploying it to anaconda, and using GitHub actions for continuous testing and delivery.

pytexshade

A python wrapper for TexShade sequence alignment shader

pytexshade-conda