institutefordiseasemodeling / emod Goto Github PK

Hi,

I am trying to run Namawala examples - it complains some additional files are needed, such as "Namawala_single_node_air_temperature_daily.bin.json". I cannot locate these files in this repository, would someone mind pointing me to them?

Many thanks and regards

Christian Schroeder de Witt

Rename master to main

EMOD has a command line option to output the schema for configuration files, but it is in a non-standard format. There is an existing standard for JSON schemas. Probably the easiest way to generate this schema is to infer it from existing configuration files using Quicktype.

The schema makes it possible to validate the configuration files and automatically generate wrappers for generating the JSON in a number of different languages such as Python, C++, Rust and Go.

or link to this
https://github.com/retomerz/mosquito

Working on a shared system, such as a cluster compute environment, I would like to be able to (and have been asked to) install this package for several non-privileged users. I can handle making the dependencies available, but is there documentation (other than reading through PrepareLinuxEnvironment.sh) on the proper setup for people?

I may also want to present the package as a container (docker or singularity). Making it possible to run the PrepareLinuxEnvironment.sh script without y/n prompts would make that a lot easier as well.

Happy to contribute where you see fit, just point me in the right direction!

I would like to make EMOD more compatible with other platforms and I'm trying to
figure out how the compilation of EMOD works. Could you explain how the logic
works? Also, which dependencies are needed for which part of EMOD?
Is python used outside of reporting?

Looking at the main SConscript file, there seems to be a section for building
shared libraries (DLLs), but as far as I understand the paths that it is
referring to do not exist (libgeneric/*). Is this directory built during the
compilation or is the code stale?

Ultimately, I would like to use CMake instead of Scons as the build manager for
better portability and possibly faster builds using Ninja.

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