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View Code? Open in Web Editor NEWDepict protein-ligand interactions, as calculated with PLIP, in UCSF Chimera
Home Page: http://tangram-suite.readthedocs.io/en/latest/tangram_plip.html
Depict protein-ligand interactions, as calculated with PLIP, in UCSF Chimera
Home Page: http://tangram-suite.readthedocs.io/en/latest/tangram_plip.html
sudo apt install python2.7-openbabel
pip install plip
pip install https://github.com/insilichem/libtangram/archive/v0.0.2.zip
pip install https://github.com/insilichem/tangram_plipgui/archive/v0.0.2.zip
Then, when I launch chimera:
Error while importing plipgui from /home/berenger/.local/lib/python2.7/site-packages:
Traceback (most recent call last):
File "/home/berenger/usr/chimera-1.13/share/chimera/extension/base.py", line 351, in _importExtension
__import__(module)
File "/home/berenger/.local/lib/python2.7/site-packages/plipgui/ChimeraExtension.py", line 8, in <module>
from plipgui.core import cmd_plip, cmd_unplip
File "/home/berenger/.local/lib/python2.7/site-packages/plipgui/core.py", line 50, in <module>
from plip.modules.preparation import PDBComplex
File "/home/berenger/.local/lib/python2.7/site-packages/plip/modules/preparation.py", line 13, in <module>
from .detection import *
File "/home/berenger/.local/lib/python2.7/site-packages/plip/modules/detection.py", line 12, in <module>
from .supplemental import *
File "/home/berenger/.local/lib/python2.7/site-packages/plip/modules/supplemental.py", line 27, in <module>
from pybel import *
TypeError: Item in ``from list'' must be str, not unicode
If, out of despair, I try to install
pip install https://github.com/insilichem/libtangram/archive/v0.0.3.zip
pip install https://github.com/insilichem/tangram_plipgui/archive/v0.0.3.zip
Then the chimera error upon startup become:
Traceback (most recent call last):
File "/home/berenger/usr/chimera-1.13/share/chimera/extension/base.py", line 351, in _importExtension
__import__(module)
File "/home/berenger/.local/lib/python2.7/site-packages/plipgui/ChimeraExtension.py", line 8, in <module>
from plipgui.core import cmd_plip, cmd_unplip
File "/home/berenger/.local/lib/python2.7/site-packages/plipgui/core.py", line 50, in <module>
from plip.modules.preparation import PDBComplex
ImportError: No module named plip.modules.preparation
So, in both cases, I don't get the tangram-plip GUI installed into my chimera...
:(
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