Core scripts for LipidMatch, PolyMatch, and FluoroMatch

For LipidMatch, FluoroMatch, and PolyMatch users should directly download from innovativeomics.com/software for the latest stable release.

Developers can edit the main algorithms here on github as a team. Then the code needs to be integrated by placing the edited code in the correct directory from the downloaded distribution for innovativeomics.com, please contact us as well ([email protected]) with major changes or project ideas, or discuss here.

Instructions for integrating the code into the software framework: Install FluoroMatch or LipidMatch from InnovativeOmics.com

If edited, put Modular.r into two directories (replace existing code):

LipidMatch-4.2\Flow\LipidMatch_Distribution

LipidMatch-4.2\FluoroMatch_Modular

Place any edited script files (genEIC.r, MS1Spectragen.r, Stats.R) into:

LipidMatch-4.2\Flow\LipidMatch_Distribution\LipidMatch_Libraries\Scripts

For the Modular version set

FLOW <- FALSE

csvInput <- FALSE #Alternatively you can keep this true and use csv inputs

ManuallyInputVariables <- FALSE

For the Flow version set

FLOW <- TRUE

Make sure to toggle the following parameters depending on your application, if both are FALSE it defaults to PFAS analysis:

Lipid <- TRUE

TWeen_pos <- FALSE

Make sure to follow all instructions for installing dependencies and package installation:

LipidMatch-4.2\FluoroMatch_Flow_Manual.docx

LipidMatch-4.2\FluoroMatch_Modular\FluoroMatch_Manual.docx

LipidMatch-4.2\FluoroMatch_Modular\Trouble_Shooting_Common_Issues.docx

If you have issues please contact Jeremy Koelmel at [email protected] or open them up here on github

• Download or clone project
• Copy the contents of the root Scripts folder into:
  • RapidTest/LipidMatch_Libraries/Scripts/