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MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

License: GNU General Public License v2.0

C++ 62.36% Perl 0.04% C 32.50% C# 0.58% Assembly 1.47% Ada 0.93% CLIPS 0.06% Pascal 0.73% SAS 0.02% Makefile 0.30% HTML 0.31% CMake 0.31% Batchfile 0.01% DIGITAL Command Language 0.28% Module Management System 0.02% M4 0.05% Roff 0.04%

mpboot's Introduction

mpboot

MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

COMPILING INSTRUCTION SINCE 2020

Clone the source code, unzip it, and rename to source
Create folder build outside folder source
Change directory to build
Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture
Run make
You will find the executable named mpboot once the make command is done.

COMPILING INSTRUCTION PRIOR TO 2020

Clone the source code, unzip it, and rename to source

Change directory to source, run following commands to update the sub-repository

       git submodule init

       git submodule update

       cd pllrepo

       git checkout subufbootmp

Create folder build outside folder source

Change directory to build

Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture

Run make

You will find the executable named mpboot once the make command is done.

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