The final version is available here.

A less quality version without appendixes is available here.

• main.tex contains the necessary packages, formating and document creation.
• main.bib contains all the bibliography
• tufle-book.cls contains the template
• pages folder contains each chapter's tex files

Compiled with

• Windows 10, Texmaker 4.5, MiKTeX 2.9
• LaTeX: latex -interaction=nonstopmode %.tex
• PdfLaTeX: pdflatex -synctex=1 -interaction=nonstopmode -file-line-error %.tex
• Full compilation command: PdfLaTeX + Bib(la)tex + PdfLaTeX (x2) + ShowPDF

It uses tiff's (@scientiffic) tufte-latex-mit LaTeX thesis format, available here.

It is based on MIT's LaTeX thesis template integrated with Tufte-LaTeX. Thanks @ttseng!