Comments (8)
jrobinso
commented on August 19, 2024
This looks like a bug, probably affecting genomes with no 'cytobands' defined. I will see if it can be fixed by modifying the genome definition file, if not the only alternative is to wait for the next point release (2.17.3).
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FrostFlow13
commented on August 19, 2024
Understood - thank you for the quick response!
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jrobinso
commented on August 19, 2024
Can you confirm the genome assembly you are using? Is it our hosted c.alibcans genome, or something custom?
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FrostFlow13
commented on August 19, 2024
I can confirm that it is not the IGV-hosted C. albicans assembly. It is a new C. albicans genome assembly I have been working on.
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jrobinso
commented on August 19, 2024
OK, are you using a genome .json file, or just the raw fasta, to define the assembly?
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FrostFlow13
commented on August 19, 2024
It is a raw .fasta file being used to define the assembly, and it is the same .fasta and .fasta.fai files being loaded in both IGV versions.
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jrobinso
commented on August 19, 2024
Yes I was just looking for workarounds, with just a fasta there aren't any. With a genome "json" file you could add a no-op cytoband file that would probably fix this. Otherwise wait a few weeks for 2.7.3
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FrostFlow13
commented on August 19, 2024
I see, thank you for at least looking into it! I'll be looking forward to 12.7.3.
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