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bgzip

circular-view

Wrapper class for JBrowse genomic circular view component

circular-view-app

cram-js

Read CRAM v3 and v2 in node or in the browser

cursor

d4server

Prototype D4 server

data-modal

A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.

extractome

Creates an "extracted" genome assembly from a fasta + list of regions

google-utils

hic-straw

Command line and web utilities for reading .hic contact matrix files

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

igv-docs-website

Markdown-based documentation website - IGV desktop application

igv-electron

igv-ipad

IGV for iPad

igv-juicebox

Prototypes exploring potential igv.js <-> juicebox.js interactions.

igv-notebook

Module for embedding igv.js in an IPython notebook

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

igv-ui

UI components for igv.js and related projects

igv-utils

igv-webapp

IGV Web App

igv-widgets

UI widgets for igvteam applications

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

igv.js-flask

Example project for integrating igv.js and flask

igv.js-react

Example project for using igv.js with React

juicebox

Visualization and analysis software for Hi-C data -

juicebox-notebook

juicebox-web

juicebox.js

HiC contact matrix visualization

sandbox