idigbio / idb-portal Goto Github PK

The portal shows "specimen" as the value for basis-of-record, but if a user wants to search by that field, they need to enter "PreservedSpecimen," which isn't apparent.

@wilsotc please feel free to edit this issue if I've mis-characterized anything.

This record is published without coordinates - https://www.gbif.org/occurrence/199452881, but appears on iDigBio's map as having 0 in the decimalLatitude and decimalLongitude fields, and is therefore showing up on the map incorrectly. Is it putting in default values when it imports from GBIF?

Edit: Sorry, here is the link on iDigBio: https://www.idigbio.org/portal/records/d94e148c-e100-4a03-bdb2-e5345fb6a309

Currently, when a requested collections page does not exist the 404 page is rendered in the display:

https://www.idigbio.org/portal/collections/ebe1c67f-4c55-440b-a3cc-1b140278b795

I'll take a look at the display logic and see if I can put together a PR for this issue, this ticket is just to document the error as found.

If this can be updated, then we can close redmine ticket 628
Spelling error "successfully"
Add "and is supported for"

idb-portal/app/views/tutorial.html

[line24]

The iDigBio Portal requires the use of an HTML5 compliant browser with cookies enabled. The Portal has been tested successfully against, and is supported for, the following browsers:
Chrome
Firefox
Safari
Internet Explorer 10,11

The flags listed in

https://github.com/iDigBio/idb-portal/blob/master/public/client/js/lib/dq_flags.js

should match what is documented in the backend wiki

https://github.com/iDigBio/idigbio-search-api/wiki/Data-Quality-Flags

which should match what is available in the backend / index.

@danstoner discovered that sometimes this page:

https://www.idigbio.org/portal/publishers

shows 0 for the "API" portion of the stats (both summary and by-publisher).

Sometimes, reloading will show an appropriate response. You can see the network request come back with an empty result set when 0s appear.

My hunch is a a timeout/race condition, as the search consistently returns results, but the response times are 400-1200ms.

app/controllers/publishers.js calls "render" on publishers.

which includes a parallel async call like this in the script:

 idbapi.summary('stats/api',{inverted: "true",minDate:"now-1d"},function(resp){

an equivalent curl request is:

curl --location --request POST 'search.idigbio.org/v2/summary/stats/api' \
--header 'Content-Type: text/plain' \
--data-raw '{inverted: "true",minDate:"now-1d"}'

Recordset pages in the iDigBio portal contain contact information that is not editable through iDigBio. There are frequent requests to update this information in iDigBio when in fact the information should be edited in the source IPT or other system. See: http://redmine.idigbio.org/issues/3846 for a recent request.

Add a link on the recordset page with information on how to update the contact information. This will vary by recordset so the text needs to include information for various scenarios (IPT, Symbiota, etc.)

When searching for:

dwc:class:Insecta

and

dwc:basisOfRecord:PreservedSpecimen

dwc:institutionCode:CM (Carnegie Museum of Natural History)

Expected:
when searching for records with class Insecta, only records of class Insecta are returned.

Actual:
Search results include record https://www.idigbio.org/portal/records/729bdadb-8e42-4c32-8068-cac41ab005e9 of class Gastropoda

(see attached screenshots)

An email address entered by users who are using the portal to download records may not be passed through if the user does not enter text in the search boxes. The outcome is that users are not notified when their downloads are complete and repeatedly submit identical jobs.

Steps to reproduce:

1. go to http://portal.idigbio.org/portal/search
2. Click "Must have media" checkbox
3. Click Download tab
4. Enter email address in Email box
5. Click download button
6. Check Celery Flower task interface. Task will appear but email address does not appear in args box as expected.

I suspect the address is not getting passed to the Download API for some reason.

If the backend download system fails the portal keeps displaying that as Status "pending".

E.g. on a current download, the status url is requesting: https://api.idigbio.org/v2/download/f1f91566-3b1f-4478-b3ed-af32703f5cca yield response:

{
  "complete": false, 
  "core_source": "indexterms", 
  "core_type": "records", 
  "expires": "2017-01-11T12:22:30.268094", 
  "form": "dwca-csv", 
  "mediarecord_fields": null, 
  "mq": null, 
  "record_fields": null, 
  "rq": {
    "scientificname": "alligator mississippiensis"
  }, 
  "status_url": "https://api.idigbio.org/v2/download/f1f91566-3b1f-4478-b3ed-af32703f5cca", 
  "task_status": "FAILURE"
}

but the portal keeps requesting that about every 4s and the status pane in the download tab keeps saying "pending"

https://github.com/iDigBio/idb-portal/blob/master/README.md#stand-alone-map-module-use

I deployed this locally and on CodePen. Both examples fail to render the map correctly. There appear to be multiple layers that are not positioned correctly.

Local Example

CodePen

https://codepen.io/cngodles/live/c521f42339969f34d9159bd5ecfbc93f

In idb-portal/config/config.js , the redis server adddresses are hard-coded.

Pull out and parameterize.

If you search via a yyyy-mm-dd format, all is well, but if you put only a 4-digit year into the start+end boxes, you'll get results outside of that range.

Options here would be (in no particular order):

• insist on a particular format to avoid ambiguity
• see if we can parse a date out of the input and feed that into the search

Darin Core Basis of Record (dwc:basisOfRecord) removed because of invalid value.

This needs to be corrected here:

https://github.com/iDigBio/idb-portal/blob/master/public/client/js/lib/dq_flags.js#L6

regarding https://www.idigbio.org/portal/publishers

The lists in each section used to be sortable by clicking on each column heading. The little up/down arrow indicators for sort are not visible and clicking in the column header does not seem to do anything.

My Chrome dev console contains:

Uncaught TypeError: $(...).tablesorter is not a function