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activepathways

Integrative pathway enrichment analysis of multivariate omics data

awesome-mac

 Now we have become very big, Different from the original idea. Collect premium software in various categories.

awesome-r-learning-resources

A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).

basset

Convolutional neural network analysis for predicting DNA sequence activity.

brook

A cross-platform programmable network tool. 一个跨平台可编程网络工具.

causaldb-finemapping-pip

A GWAS fine-mapping pipeline used in CAUSALdb

cellwalkr

CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements

cradle

create_cistarget_databases

Create cisTarget databases

cuttag-pipeline

Pipeline for Cut&Tag analysis

deeplearning

deeplearning-

深度学习入门教程, 优秀文章, Deep Learning Tutorial

dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

dna-sequence-machine-learning

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

eaglec

A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

ggh4x

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

hic_tools

A collection of tools for Hi-C data analysis

hiccompareworkshop

Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76

hicsampler

higlass-server

Server component for HiGlass that manages and serves tiled data

htvertebrates

scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species

imputation_beagle_tutorial

Imputation-beagle-tutorial

irena

R package IReNA

kkndme_tianya

天涯 kkndme 神贴聊房价

marge-snp-for-tf-

matrixeqtl

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

methylmix

Identification of differentially methylated genes in biomedical data

motif-clustering

Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

phylostratigraphy

Tutorial on how to perform phylostratigraphy

piggtex-pipeline-v0