Comments (7)
I just created a label for v1.0
and a management board
from mzqc.
Playing necromancer here for a bit, finding what happened to the old CV's was challenging with current documentation. I'd suggest including a note somewhere in either the readme or the spec-doc as bread-crumbs for anyone getting up to speed.
from mzqc.
Which version did you need specifically, and what is different about it?
Normally CV updates will only consist of additions, so the latest version should have all the terms of older versions as well. Why would you need an older version of the CV?
from mzqc.
from mzqc.
I think loading the OBO from the old branch is going to be the best solution.
Moving from qcML to mzQC was a non-backwards compatible change, and merging the QC CV with the MS now, as required before finalization of mzQC v1.0 (#141), will definitely not be fully backwards compatible either.
This is not a major issue imo, because there are very few legacy systems that support qcML. Probably OpenMS is the only such system.
Are there blocking issues that require maintaining qcML support in OpenMS, rather than switching to mzQC? mzQC is easier to write and read and more powerful to store data, so why stick with qcML as only tool that supports it?
from mzqc.
Axel is working on that in OpenMS already, no? But if need be, we could create a dedicated legacy qcML branch, with the old stuffs, I suppose.
from mzqc.
If we are the only software that's going to have to worry about backwards compatibility of reading the old files then I can just make a note in our code that uses the old CVs.
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Related Issues (20)
- CV request guidelines HOT 1
- QC2 sample example files use QC term already in MS
- terms requested in PSI-MS #113 used in our examples HOT 1
- terms requested in PSI-MS #112 used in our examples HOT 1
- terms requested in PSI-MS #117 used in our examples HOT 1
- Our set-of-runs example needs a CV term in PSI-MS HOT 1
- For metabo and set-of-runs example needs a PSI-MS CV terms (instead of QC CV HOT 2
- mtb example has 2 minor issues HOT 1
- mzML example still uses QC CV terms HOT 3
- USI example uses wrong SHA term accession
- individual run example needs updating HOT 2
- QC2 sample needs update
- github representation needs dust-up and proof-read
- Remove QC CV from markup docs
- Some parent terms not found when loading qc-cv.obo HOT 2
- Default values in analysisSoftware for version and uri HOT 2
- Logo for MS-Quality-hub HOT 1
- Repository documentation HOT 1
- Discuss format for date-time fields in mzQC HOT 4
- Add guide to visualisation from metrics HOT 4
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