Comments (4)
e.g. to value distribution terms, how to use the quantiles
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maybe general guide to metric terms with two sections:
- visualisation
- use/interpretation
- combination (mapping rules)
For 2. when 'it depends...' e.g. the peak density indications for issues in different modes/scenarios: peakpick algo; fragmentation scheduling or ion collection; sample content, local reference/consistency; additional identification assessment
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For 3. default interpretations in case mapping term is missing? (Any relationship: has_value_concept STATO:0000036 ! outlier
term should have a threshold definition term)
from mzqc.
Rather than in the specification document, this can be part of the online documentation. This is more related to specific examples and providing guidance, rather than the technical specification.
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Related Issues (20)
- terms requested in PSI-MS #112 used in our examples HOT 1
- terms requested in PSI-MS #117 used in our examples HOT 1
- Our set-of-runs example needs a CV term in PSI-MS HOT 1
- For metabo and set-of-runs example needs a PSI-MS CV terms (instead of QC CV HOT 2
- mtb example has 2 minor issues HOT 1
- mzML example still uses QC CV terms HOT 3
- USI example uses wrong SHA term accession
- individual run example needs updating HOT 2
- QC2 sample needs update
- github representation needs dust-up and proof-read
- Remove QC CV from markup docs
- Some parent terms not found when loading qc-cv.obo HOT 2
- Default values in analysisSoftware for version and uri HOT 2
- Logo for MS-Quality-hub HOT 1
- Repository documentation
- Discuss format for date-time fields in mzQC HOT 4
- CI for semantic validation of example files not working
- Collection of QC tools
- Update examples to mzQC v1.0 HOT 1
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