Comments (5)
On the topic of a missing wiki, I think we should be careful not to disperse information to too many sources (readme wiki spec_doc readthedocs githubpages and so on) as we would have to keep all in sync and maintained. Closing this in favour of a clear set of specification documents and readme files in each repo folder.
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wiki is being built
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We also need contribution guidelines. That's how it's called in GitHub anyway, we would need an easy to apply guide for requesting new CV terms most.
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We need to create a specification document.
Agreed to start a document in markdown in the folder "specification_document".
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As a starting point, we could write down our decisions on the use of json values that have a resemblance to data frames and add the different types of values in different metrics, each with an example.
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Related Issues (20)
- CV request guidelines HOT 1
- QC2 sample example files use QC term already in MS
- terms requested in PSI-MS #113 used in our examples HOT 1
- terms requested in PSI-MS #112 used in our examples HOT 1
- terms requested in PSI-MS #117 used in our examples HOT 1
- Our set-of-runs example needs a CV term in PSI-MS HOT 1
- For metabo and set-of-runs example needs a PSI-MS CV terms (instead of QC CV HOT 2
- mtb example has 2 minor issues HOT 1
- mzML example still uses QC CV terms HOT 3
- USI example uses wrong SHA term accession
- individual run example needs updating HOT 2
- QC2 sample needs update
- github representation needs dust-up and proof-read
- Remove QC CV from markup docs
- Some parent terms not found when loading qc-cv.obo HOT 2
- Default values in analysisSoftware for version and uri HOT 2
- Logo for MS-Quality-hub HOT 1
- Repository documentation
- Discuss format for date-time fields in mzQC HOT 4
- Add guide to visualisation from metrics HOT 4
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