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build-instructions's Introduction

HPC Software Build Instructions

Contains information on building and optimising software for various HPC platforms.

This is a community resource and we are keen to have contributions from all. Please open an issue or pull request if you wish to contribute.

How to Contribute

To contribute to these resources, first you have to fork it on GitHub and clone it to your machine, see Fork a Repo for the GitHub documentation on this process.

Once you have made your changes and updated your Fork on GitHub you will need to Open a Pull Request.

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build-instructions's Issues

VASP MKL build instructions testsuite errors

I am trying to follow the guide here: https://github.com/hpc-uk/build-instructions/blob/main/apps/VASP/build_vasp_6.2.0_ARCHER2_GCC_MKL.md (thank for updating the guide!) to compile VASP linked with MKL.

I seems to get critical errors while running the test suite. There are quite a few failures but one of them is: bulk_InP_SOC_DFT_ISYM. (export VASP_TESTSUITE_TESTS="bulk_InP_SOC_DFT_ISYM=2). The tests before this one run fine.
The MPI processed are launched with srun --exclusive -N1 -n4 from an interactive job session.

The errors were like:

WARNING: Sub-Space-Matrix is not hermitian in DAV           16   1.5817296032709554
 WARNING: Sub-Space-Matrix is not hermitian in DAV           15  -3.7316666394745477
 WARNING: Sub-Space-Matrix is not hermitian in DAV           16   1.5817296032709554
 WARNING: Sub-Space-Matrix is not hermitian in DAV           17 -0.48696451466843421
 WARNING: Sub-Space-Matrix is not hermitian in DAV           18 -0.55372457718523349
 WARNING: Sub-Space-Matrix is not hermitian in DAV           19  0.65066340032911818
 WARNING: Sub-Space-Matrix is not hermitian in DAV           20  0.54385871213422110
 WARNING: Sub-Space-Matrix is not hermitian in DAV           21 -0.19876054272358654
 WARNING: Sub-Space-Matrix is not hermitian in DAV           17 -0.48696451466843421
 WARNING: Sub-Space-Matrix is not hermitian in DAV           18 -0.55372457718523349
 WARNING: Sub-Space-Matrix is not hermitian in DAV           19  0.65066340032911818
 WARNING: Sub-Space-Matrix is not hermitian in DAV           20  0.543858712134221

The sci-lib build I previously compiled appears to work fine with the teststuite though.

Isca fixes for full ARCHER2

Hi there,

It would be good to update the Isca climate model build instructions to work on the full ARCHER2 system. There's no rush, just flagging so I don't forget...

Thanks!
Andrew

Add ${MINICONDA_ML_ROOT}/bin to PATH before `pip` commands

Hi @mbareford,
Running through this today I found between the "Setup initial environment" and "Install ML packages" sections of build_miniconda3_cirrus_gpu.md I got command not found errors for pip and python.
I added:
export PATH=${MINICONDA_ML_ROOT}/bin:$PATH
to my version.
This also prevents pip-installing the packages onto the wrong virtual environment in case pip is found, but is from another location.
Cheers

Disk space requirements

Hi,
Could disk space requirements be added to the byenv build instructions please? My student has attempted to install pytorch (and will also require tensorflow) and has exceeded his quota. It would be useful to know the disk requirements so we can request an increased quota for him.
Thanks,
Dave

epw is not included

It would be useful if you could add EPW to the build as it is not built by default. It is a build target but not included in the "all" target. It can be built by adding

make epw

after the initial make all.

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