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hoonbiolab's Projects

platinum icon platinum

Run multiple Pipeline5 instances at once

prepareaa icon prepareaa

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.

pymi icon pymi

Python implementation of mutual information calculation using B-spline from Daub et. al.

sexinference icon sexinference

Infer sex from DNA sequencing data and RNA sequencing data

sigprofilersinglesample icon sigprofilersinglesample

SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity of each signature in the sample and assigns the probability for each signature to cause a specific mutation type in the sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

svclone icon svclone

A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

xtea icon xtea

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

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