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djchin25 avatar djchin25 commented on September 16, 2024

Just noticed that despite downloading and installing 1.99.2, the sessionInfo shows 1.99.1.

from scde.

hummuscience avatar hummuscience commented on September 16, 2024

Getting that same error on scde 1.99.4

R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 17.04

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.7.0
LAPACK: /usr/lib/lapack/liblapack.so.3.7.0

locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base

other attached packages:
[1] pheatmap_1.0.8 limma_3.34.3
[3] DESeq2_1.18.1 SummarizedExperiment_1.8.0
[5] DelayedArray_0.4.1 matrixStats_0.52.2
[7] Biobase_2.38.0 GenomicRanges_1.30.0
[9] GenomeInfoDb_1.14.0 IRanges_2.12.0
[11] S4Vectors_0.16.0 BiocGenerics_0.24.0
[13] scde_1.99.4 flexmix_2.3-13
[15] lattice_0.20-35

loaded via a namespace (and not attached):
[1] nlme_3.1-131 bitops_1.0-6
[3] pbkrtest_0.4-7 bit64_0.9-7
[5] devtools_1.13.4 RColorBrewer_1.1-2
[7] httr_1.3.1 tools_3.4.2
[9] backports_1.1.1 R6_2.2.2
[11] rpart_4.1-11 DBI_0.7
[13] Hmisc_4.0-3 lazyeval_0.2.1
[15] mgcv_1.8-22 colorspace_1.3-2
[17] nnet_7.3-12 withr_2.1.0
[19] gridExtra_2.3 bit_1.1-12
[21] curl_3.0 compiler_3.4.2
[23] git2r_0.19.0 quantreg_5.34
[25] htmlTable_1.11.0 Cairo_1.5-9
[27] SparseM_1.77 scales_0.5.0
[29] checkmate_1.8.5 genefilter_1.60.0
[31] Lmoments_1.2-3 stringr_1.2.0
[33] digest_0.6.12 foreign_0.8-69
[35] minqa_1.2.4 distillery_1.0-4
[37] XVector_0.18.0 base64enc_0.1-3
[39] pkgconfig_2.0.1 htmltools_0.3.6
[41] lme4_1.1-14 extRemes_2.0-8
[43] htmlwidgets_0.9 rlang_0.1.4
[45] RSQLite_2.0 rstudioapi_0.7
[47] BiocInstaller_1.28.0 bindr_0.1
[49] BiocParallel_1.12.0 acepack_1.4.1
[51] dplyr_0.7.4 car_2.1-6
[53] RCurl_1.95-4.8 magrittr_1.5
[55] modeltools_0.2-21 GenomeInfoDbData_0.99.1
[57] Formula_1.2-2 Matrix_1.2-11
[59] Rcpp_0.12.14 munsell_0.4.3
[61] stringi_1.1.6 edgeR_3.20.1
[63] MASS_7.3-47 zlibbioc_1.24.0
[65] plyr_1.8.4 blob_1.1.0
[67] grid_3.4.2 splines_3.4.2
[69] annotate_1.56.1 locfit_1.5-9.1
[71] knitr_1.17 tcltk_3.4.2
[73] rjson_0.2.15 geneplotter_1.56.0
[75] XML_3.98-1.9 glue_1.2.0
[77] RcppArmadillo_0.8.300.1.0 latticeExtra_0.6-28
[79] data.table_1.10.4-3 pcaMethods_1.70.0
[81] nloptr_1.0.4 MatrixModels_0.4-1
[83] purrr_0.2.4 gtable_0.2.0
[85] RMTstat_0.3 tidyr_0.7.2
[87] assertthat_0.2.0 ggplot2_2.2.1
[89] xtable_1.8-2 survival_2.41-3
[91] tibble_1.3.4 AnnotationDbi_1.40.0
[93] memoise_1.1.0 bindrcpp_0.2
[95] cluster_2.0.6 Rook_1.1-1
[97] brew_1.0-6

from scde.

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