hidelab / lincs-pathprint Goto Github PK
View Code? Open in Web Editor NEWNew pipeline for pathprinting LINCS data
New pipeline for pathprinting LINCS data
The script terminates on HPC before it goes through all samples. The termination happens in here:
# This displays a running total of the arrays processed for tracking
SCE<-vector("list", length(files))
platform<-vector("list", length(files))
for (i in 1:length(files)){
load(files[i])
print(i)
SCE[[i]]<-temp1[[1]]$SCG
platform[[i]]<-temp1[[1]]$platform
}```
Relative numbers:
gctx_experiments folder (expression files per expreriment): 345,976
sq_gctx_experiments folder (fingerprints per experiment): 322,910
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