Comments (2)
This error log actually gives quite a typical stack trace that shows what happens inside ISA-Tab parsing: https://gist.github.com/drj11/23b3c9537ae250413a4034d5ad498ade
from genometranslationcommons.
Case notes: what is an attribute?
Please see refinery/data_set_manager/isa_tab_parser.py
Attribute
instances are not created at many places in the code. In _parse_attribute
https://github.com/refinery-platform/refinery-platform/blob/develop/refinery/data_set_manager/isa_tab_parser.py#L435-L442
In fact, Attribute
is created it only one place.
It is created in _parse_attribute
if the has_attribute
flag is false by the time it is tested.
the has_attribute
flag is set to True
when either:
header_components
has length 1: and the node already has an attribute of that typeheader_components
has length more than 1 (2?): and the node already has an attribute of that type and subtype;
However, _parse_attribute
is not called unless the higher level code decides that the node is an attribute.
This is in _parse_node
which calls is_attribute
from genometranslationcommons.
Related Issues (19)
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- Sample name doesn't get included in GTC HOT 1
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