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(def clustered (cluster (seq (org.apache.commons.io.FileUtils/listFiles (new java.io.File "/path/to/documents/") nil false))))

To see this tree visualized, make sure you have the visualize/ dir.  Change *protovis-json-file* in protovis.clj to be the *full* path to your visualize/protovis-3.2/flare.js  Then:

(def json (.replace (pof->js clustered 3) "/path/to/documents/" ""))  ; 3 is a good number of interesting words to show.  removing the dir path to each file keeps everything much cleaner.
(write-protovis-file json)

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