hedayatbehnam / primace Goto Github PK

For prediction of individual we can add survival probability of each time also overal survival probabilty curv.

We can create a models archive dir in s3 bucket and put each trained model in it.
And another dir for better models.

R-cmd-check2 should be removed,
check-test-coverage should be corrected

It is better to put a badge for project instruction website built with pkgdown to README file.

To create a general dashboards for priviledged users who can are allowed to performs data entry

Define correct path for writing binary file from s3 bucket to /root/tmp writable dir in liara docker

we can add github logo to link to gh repo, a google logo to link to gmail of [email protected], link to artcile, etc...

Footer part is ok in most resolutions, be in my mobile landscape it has extra unnecessary height.

We have to replace Rscript{0} with Rscript {0} in install paws and also last steps.

Current plot in analytics page has numerical vars as groups. It should be fixed

For users page structure of website should be multipaged

a login page logo on the right upper corner should be added, with shinyauthr package

it is necessary to add a scheduled web app availabity on daily basis

To hetter manage gh-pages a separate branch is better to be dedicated to it.

to ensure not pushing incorrect docker image create a separate docker-test workflow for non-main branch

We need to have an automated workflow which check when main dataset has modified

It is necessary to add a workflow with scheduled check for new dataset.

It is a good idea to put test coveage and license badge in readme.md

We can use official mariaDB package to connect to database.
And use mariaDB as DBaas.

Webapp-availability workflow should detect non 200 response as success.

Time Dependent Score calculator as a reference for manual prediction of unknown target data

badge address is not correctly determined

At first admin should have a dashboard

Checking for new dataset workflow must be separated from main workflow.

In prediction tool, two boxes, prediction table and performance table do not have scrolling features. This resulted in overshoot of table in prediction table. And potentially could affect performance table

Add read_data_s3() function to utilities.R to read dataset object from aws s3 bucket

We can add a simple form in contact tab to connect to dbaas to collect users comments

add Coronary to title, as percutaneous coronary interventions

I think analytics page should have more informative content such as MACE number and MACE in each subgroub.

It is better to put R-MLOps-Check below the PRIMACE webapp badge

It is a good thing if a dark theme designed as main design or alternative to light design.

It is necessary to add google analytics for

it seems LIARA paas server has shut down, so it is necessary to change paas provider asap

We shoukd add a link to article in README

It seems in readme file 7 ML model is written instead of 2 ML models.

Github actions raise error when preprocessing() triggers in the case of new datasets.possibly due to prepared dataset us provided to data_modification() function

For step check-new-datase of R-MLOps-check workflow, we can use a shell script like as follows:

#!/bin/bash
echo "FILE_STAT=$(Rscript helper/check_lastModification.R)" 
if [ $FILE_STAT == NULL ]
then
    echo "no dataset detected"
elif [ $FILE_STAT == FALSE ]
then
    echo "dataset has not been modified" 
else
    Rscript -e "primace::preprocessing()"
fi

Applying load test on web site to assess its performance in high turn over situations

check my.cnf content

because the size of the docker image is large, and shinyapps.io host for free has limitted resources, so I suggest to add a simple webpage in shinyapps.io host with a link to redirect users to primace.aikadeh.com