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nxtrim

Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.

officer

:cop: officer: office documents from R

ohook

An universal Office "activation" hook with main focus of enabling full functionality of subscription editions

olgen-coverage-limit

Tool for computation of the minimal coverage depth for given variant allele frequency and probability of sequencing error.

omim

Repo for downloading and storing OMIM data

omim-1

omimscraping

Tools for working with the OMIM API.

opendocx

docx writing from R

optipyzer

Multi-Species Codon Optimization Engine

orphadata_aggregated

Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases

ot-review

Bioinformatics analysis for CRSIPR/Cas9 off-target review

paired-library

pauvre

Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.

pbampliconclustering

exploratory scripts for clustering ccs amplicon data

pbbam

PacBio BAM C++ library

pblat

parallelized blat with multi-threads support

pbmm2

A minimap2 frontend for PacBio native data formats

pcrduplicates

method to estimate PCR duplication rate from high-throughput sequencing data

pdfium

pdfjam

The pdfjam package for manipulating PDF files

pear

Pair-End AssembeR

phylogicndt

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

plannotate

Webserver and command line tool for annotating engineered plasmids

png2svg

:twisted_rightwards_arrows: Convert small PNG images to SVG Tiny 1.2

pocketsphinx-python

Python module installed with setup.py

poretools

a toolkit for working with Oxford nanopore data

preuss

PREUSS: predicting RNA editing using sequence and structure

primateai-3d

primer3

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).