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cellfinder

Automated 3D cell detection and registration of whole-brain images

cellfinder-core

Standalone cellfinder cell detection algorithm

cellmapping

Registering mouse brain images to an atlas and detecting and counting cells in different regions of the brain.

cellpose

a generalist algorithm for cellular segmentation

centertrack

Simultaneous object detection and tracking using center points.

checkfilepaths

clearmap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

co-tracker

CoTracker is a model for tracking any point (pixel) on a video.

coco-annotator

:pencil2: Web-based image segmentation tool for object detection, localization and keypoints

covid-sanity

Aspires to help the influx of bioRxiv / medRxiv papers on COVID-19

cpl_media

A library providing kivy support for playing and recording from various cameras.

createimageevaldb

cs-video-courses

List of Computer Science courses with video lectures.

cutie

[arXiv 2023] Putting the Object Back Into Video Object Segmentation

cvat

Annotate better with CVAT, the industry-leading data engine for machine learning. Used and trusted by teams at any scale, for data of any scale.

czifile

Read Carl Zeiss(r) Image (CZI) files. Forked from https://pypi.org/project/czifile

d2go

D2Go is a toolkit for efficient deep learning

d3

A JavaScript visualization library for HTML and SVG.

d3s

D3S - Discriminative Single Shot Segmentation Tracker (CVPR 2020)

dancetrack

[CVPR2022] DanceTrack: Multiple Object Tracking in Uniform Appearance and Diverse Motion

dannce

datasciencecoursera

datasharing

The Leek group guide to data sharing

deep-learning-drizzle

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

deep-oc-sort

https://arxiv.org/abs/2302.11813

deepethogram

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

deepslice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

delf-pytorch

PyTorch Implementation of "Large-Scale Image Retrieval with Attentive Deep Local Features"

delivr_cfos