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Hi there πŸ‘‹

I'm Hasan, a Postgrad Researcher at Yale School of Medicine in New Haven, CT πŸ‡ΊπŸ‡Έ.

Previously @SciLifeLab, @Karolinska, @KTH, @SU in Stockholm, Sweden πŸ‡ΈπŸ‡ͺ.

  • 🧠 I’m currently working on understanding the multi-omic (genomic/transcriptomic/epigenetic) profiles of various tumors through computational methods
  • πŸ’¬ Ask me about bioinformatics applications on healthcare problems
  • ⚑️ I’m looking to collaborate on bioinformatics and computational biology projects
  • ⏳ I'm learning web-development (HTML/CSS)
  • πŸ‘¨πŸ»β€πŸ’» Languages: R, Python, Bash, Matlab, SQL
  • πŸ“ πŸ‡ΊπŸ‡Έ | πŸ‡ΈπŸ‡ͺ | πŸ‡ͺπŸ‡Έ | πŸ‡ΉπŸ‡·

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Hasan Alanya's Projects

afterqc icon afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

awesome-python icon awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

chipseq icon chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

clusterprofiler icon clusterprofiler

:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

ena-ftp-downloader icon ena-ftp-downloader

Graphical user interface (GUI) for bulk downloading run/analysis files from ENA via FTP.

enabrowsertools icon enabrowsertools

A collection of scripts to assist in the retrieval of data from the ENA Browser

encoded icon encoded

Metadata database for ENCODE project

enrichmentmapapp icon enrichmentmapapp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

fastqpuri icon fastqpuri

fastq quality assessment and filtering tool

freecodecamp icon freecodecamp

freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

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