haotianteng / boostnano Goto Github PK

Hi
After installing Boostnano exporting PATH into Python path, and all of requirements has been installed, I met such trouble when using command : python ~/biosoft/BoostNano/boostnano/boostnano_eval.py -i fast5_pass/ -o 02BoostNano/ -m ~/biosoft/BoostNano/model/

Traceback (most recent call last):
File "/apps/users/yefei/biosoft/BoostNano/boostnano/boostnano_eval.py", line 8, in
from boostnano.boostnano_model import CSM
ImportError: No module named boostnano.boostnano_model

Check the folder in BoostNano/model/, indeed, there was no file named boostnano.boostnano_model

What's more, Check out the sample code in the Jupyter Notebook Sample.ipynb for how to use the package. in REANDME, however, I can open the file--Sample.ipynb, but have no idea of it, could you please tell me how to use BoostNano with more detail ?

Thanks very much

Hi,

Just wondering if I can use BoostNano for removing the adapter and poly A tail. I tried to install it but am getting the error saying ImportError: cannot import name 'hmm' from 'boostnano'. I looked in the setup.py file and found that it says "nanopre.hmm" instead of "boostnano.hmm" in the extension.
Also, there is an extra "self." in the em.py file. I tried to fix these bugs and run but I sill get the same error.

Thanks

Hello : )

After installing Boostnano and all requirements in a remote Linux Server, I met with two issues when using commands.
One was trying to run the command: "python boostnano_eval.py -i ../sample_data/ -o ~/Test/ -m ../model/", and it raised the error: "KeyError: "Unable to open object (object 'Raw' doesn't exist)". Another was trying to run the command: "python hand_label.py", and it raised the error: "ImportError: cannot import name 'is_pyqt5' from 'matplotlib.backends.qt_compat".

I have no idea about these issues, would you please offer me some suggestions? Thanks a lot!