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Metabolic pathway inference using non-negative matrix factorization with community detection

Home Page: https://github.com/hallamlab/triUMPF

License: GNU General Public License v3.0

Python 100.00%
multi-label-classification multi-label-learning metabolic-pathways metabolic-reconstruction non-negative-matrix-factorization subnetwork community-detection pathway-prediction biocyc metagenomics

triumpf's Issues

Training Example 3 Error

Hi, I'm trying to run the command in Training Example 3 and got this error.

File "triUMPF_materials/triUMPF/src/model/triumpf.py", line 474, in __optimize_r
self.R = np.multiply(self.R.toarray(), tmp)
AttributeError: 'matrix' object has no attribute 'toarray'

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