hall-lab / long-read-validation Goto Github PK

Hi，there,

I am running the long-read-validation approach with this command:
../long-read-validation/longReadValidate -i HG00513.chr1.hg38.No_INS_new.bedpe -m bedpe/slop0/HG00513.chr1.pacbio.splitreads.excldups.breakpoint.bedpe.gz -p bedpe/slop0/HG00513.chr1.pacbio.splitreads.excldups.breakpoint.bedpe.gz -s 1 > HG00513.chr1.sv.vali.bedpe

as I do not have moleculo sequences for this sample, I used the pacbio there. in the results, all events got '0 0' added to the last two columns, do you know why I got all negatives?

Thank you .