griffithlab / civic2clinvar Goto Github PK
View Code? Open in Web Editor NEWextraction of CIViC variants into the clinvar submission format
License: MIT License
extraction of CIViC variants into the clinvar submission format
License: MIT License
When running
civic2clinvar 1,3-5
The following error is produced:
Traceback (most recent call last):
File "/Users/awagner/anaconda/envs/civic2clinvar/bin/civic2clinvar", line 11, in <module>
load_entry_point('civic2clinvar', 'console_scripts', 'civic2clinvar')()
File "/Users/awagner/anaconda/envs/civic2clinvar/lib/python3.6/site-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "/Users/awagner/anaconda/envs/civic2clinvar/lib/python3.6/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/Users/awagner/anaconda/envs/civic2clinvar/lib/python3.6/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/awagner/anaconda/envs/civic2clinvar/lib/python3.6/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/Users/awagner/Workspace/git/civic2clinvar/civic2clinvar/cli.py", line 47, in main
assertions_to_clinvar_csv(id_list, out)
File "/Users/awagner/Workspace/git/civic2clinvar/civic2clinvar/c2c.py", line 87, in assertions_to_clinvar_csv
record['Clinical significance citation'] = ';'.join(variant.source_ids)
File "/Users/awagner/Workspace/git/civicpy/civicpy/civic.py", line 121, in __getattr__
return object.__getattribute__(self, item)
AttributeError: 'Variant' object has no attribute 'source_ids'
support tests and CI with Travis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.