Comments (8)
Nice! I just updated the Manubot translation-server to zotero/translators@28f344cd, which includes zotero/translators@edde701. But I'm still getting the same result as above for manubot cite https://www.clinicaltrials.gov/study/NCT04619628
with the title as CTG Labs - NCBI
. I would expect this now to be the actual title, kind of confused.
from covid19-review.
Oh no! I'm definitely interested in keeping an eye on this.
from covid19-review.
Also noting the URL format used for resolution: https://clinicaltrials.gov/ct2/show/NCT04619628. This URL currently redirects to the classic view, although I imagine eventually it which switch to redirect to the new view if classic is retired.
I think updating Bioregistry is a good idea. I'll make a PR for that.
I'm not sure whether the Zotero citation infrastructure that Manubot relies on will be stable
This is the bigger worry IMO, so good to keep in mind when we upgrade the bioregistry version in Manubot, and perhaps to test so we can report any bugs to Zotero beforehand.
from covid19-review.
One solution for upgrading manubot is to simply generate URLs that are https://bioregistry.io/:, then you don't have to update this in manubot ever since this can be handled upstream
from covid19-review.
perhaps to test so we can report any bugs to Zotero beforehand.
Directly testing the classic and new website formats indicates there will be problems. I'm assuming the Zotero translator is used for both.
$ manubot cite https://classic.clinicaltrials.gov/ct2/show/NCT04619628
[
{
"id": "12D6rB04F",
"type": "webpage",
"abstract": "Safety and Immunogenicity of COVI-VAC, a Live Attenuated Vaccine Against COVID-19 - Full Text View.",
"language": "en",
"title": "Safety and Immunogenicity of COVI-VAC, a Live Attenuated Vaccine Against COVID-19 - Full Text View - ClinicalTrials.gov",
"URL": "https://clinicaltrials.gov/ct2/show/NCT04619628",
"accessed": {
"date-parts": [
[
"2023",
6,
29
]
]
},
"note": "This CSL Item was generated by Manubot v0.5.5 from its persistent identifier (standard_id).\nstandard_id: url:https://classic.clinicaltrials.gov/ct2/show/NCT04619628"
}
]
$ manubot cite https://www.clinicaltrials.gov/study/NCT04619628
[
{
"id": "aHoxDwRa",
"type": "webpage",
"title": "CTG Labs - NCBI",
"URL": "https://www.clinicaltrials.gov/study/NCT04619628",
"accessed": {
"date-parts": [
[
"2023",
6,
29
]
]
},
"note": "This CSL Item was generated by Manubot v0.5.5 from its persistent identifier (standard_id).\nstandard_id: url:https://www.clinicaltrials.gov/study/NCT04619628"
}
]
This trial ID isn't even the best example because it doesn't set all the metadata that zotero/translators#2153 added support for, like the creators.
from covid19-review.
I opened a similar issue for the Zotero translator. I don't know enough Javascript to make the updates myself. zotero/translators#3069
from covid19-review.
Good news on this, Zotero contributors responded to my issue and updated the clinicaltrials.gov.js
translator. I believe we would need to update the Zotero translation-server (manubot/manubot#82) before we can test those changes in Manubot.
from covid19-review.
It seems like your translation-server update worked. I tested another URL from the test case of a recent commit zotero/translators@aa7d6a2
$ curl -d 'https://www.nrc.nl/nieuws/2022/12/03/wikipedia-wordt-onbetrouwbaar-alweer-a4150299' -H 'Content-Type: text/plain' https://translate.manubot.org/web
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 589 100 507 100 82 479 77 0:00:01 0:00:01 --:--:-- 557[{"key":"ZTT5BNZK","version":0,"itemType":"newspaperArticle","creators":[{"firstName":"Maxim","lastName":"Februari","creatorType":"author"}],"tags":[],"title":"Column | Wikipedia wordt onbetrouwbaar. Alweer","publicationTitle":"NRC","rights":"Copyright Mediahuis NRC BV","url":"https://www.nrc.nl/nieuws/2022/12/03/wikipedia-wordt-onbetrouwbaar-alweer-a4150299","abstractNote":"Column:Maxim Februari","date":"2022-12-03","language":"nl-NL","libraryCatalog":"www.nrc.nl","accessDate":"2023-07-13T15:42:12Z"}]
The output matches at first glance.
The output does not match the classic clinical trials URL test case:
$ curl -d 'https://classic.clinicaltrials.gov/ct2/show/NCT04292899' -H 'Content-Type: text/plain' https://translate.manubot.org/web
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 599 100 544 100 55 408 41 0:00:01 0:00:01 --:--:-- 449[{"key":"5KR82YAW","version":0,"itemType":"webpage","creators":[],"tags":[],"title":"Study to Evaluate the Safety and Antiviral Activity of Remdesivir (GS-5734™) in Participants With Severe Coronavirus Disease (COVID-19) - Full Text View - ClinicalTrials.gov","url":"https://clinicaltrials.gov/ct2/show/NCT04292899","abstractNote":"Study to Evaluate the Safety and Antiviral Activity of Remdesivir (GS-5734™) in Participants With Severe Coronavirus Disease (COVID-19) - Full Text View.","language":"en","accessDate":"2023-07-13T15:42:56Z"}]
For example, the creators are empty.
from covid19-review.
Related Issues (20)
- References missing in PDF HOT 19
- Revisions for Diagnostics manuscript HOT 11
- New Paper (Other): [Title]
- New Paper (Vaccine): Plausibility of Claimed Covid-19 Vaccine Efficacies by Age: A Simulation Study
- New Paper (Diagnostic): The Usefulness of Antigen Testing in Predicting Contagiousness in COVID-19
- New Paper (Other): Inflammasome activation in infected macrophages drives COVID-19 pathology
- New Paper (Other): Insights on the evolution of Coronavirinae in general, and SARS-CoV-2 in particular, through innovative biocomputational resources
- New Paper (Other): The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic
- New Paper (Other): The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
- Figure for Diagnostics Manuscript
- Need to appeal arXiv rejection of the novel vaccines manuscript HOT 23
- HTML manuscript not updating HOT 7
- Revisions to Novel Vaccines manuscript HOT 5
- Revisions for Traditional Vaccines Manuscript HOT 4
- External resources workflow broke on 2023-01-13
- "Commit" not recognized in build.sh HOT 3
- Correct PubMed metadata for traditional vaccines manuscript HOT 2
- New Paper (Diagnostic): Real-world performance of SARS-Cov-2 serology tests in the United States, 2020
- New Paper (Diagnostic): Comparison of the analytical and clinical sensitivity of thirty-four rapid antigen tests with the most prevalent SARS-CoV-2 variants of concern during the COVID-19 pandemic in the UK
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from covid19-review.