The kgcl-java from gouttegd

Damien Goutte-Gattat, PhD (he/him)

In no particular order:

🧑‍🔬 Biocurator and ontology editor at FlyBase
🧑‍💻 Free software developer
🧑‍💻 Slackware user
🥷 Digital privacy advocate
🇫🇷 French

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kgcl-java's Issues

No option for `--format` that `robot` provides.

I'm trying to get an output in ofn format. When I look at the help for kgcl-robot-standalone-0.2.0.jar I don't see --format option:

kgcl-robot apply --help
usage: robot apply -i <INPUT> [-k <CHANGE> | -K <FILE> ] -o <OUTPUT>
    --add-prefix <arg>      add prefix 'foo: http://bar' to the output
    --add-prefixes <arg>    add JSON-LD prefixes to the output
    --catalog <arg>         use catalog from provided file
 -h,--help                  print usage information
 -i,--input <arg>           load ontology from file
 -k,--kgcl <arg>            apply a single change
 -K,--kgcl-file <arg>       apply all changes in specified file
    --no-partial-apply      apply all changes or none at all
    --no-reject-file        do no write rejected change to a file
    --noprefixes            do not use default prefixes
 -o,--output <arg>          save ontology to file
 -p,--prefix <arg>          add a prefix 'foo: http://bar'
 -P,--prefixes <arg>        use prefixes from JSON-LD file
 -R,--reject-file <arg>     write rejected change in specified file
    --strict                use strict parsing when loading an ontology
 -V,--version               print version information
 -v,--verbose               increased logging
 -vv,--very-verbose         high logging
 -vvv,--very-very-verbose   maximum logging, including stack traces
 -x,--xml-entities          use entity substitution with ontology XML
                            output

Am I missing anything?

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