Comments (5)
@gevro can you confirm that the subreads_to_ccs.bam
and ccs.bam
files have the same corresponding ZMWs?
Is there any output present in blah.fastq
?
from deepconsensus.
I just confirmed by extracting the zmw hole #'s from each, and they are identical. So that can't be the reason.
And no fastq file was created.
from deepconsensus.
@gevro is it possible to share data here so we can examine the issue?
from deepconsensus.
Sure. Do you have a dropbox?
Or e-mail address and I can send a link.
from deepconsensus.
@gevro please email me at my github username @google.com
from deepconsensus.
Related Issues (20)
- Error detecting params.json using docker in debian (10) HPC HOT 2
- Installation from source file problem HOT 2
- lower quality and less reads in deepconsensus 1.0 output compared to ccs HOT 2
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- [Repeat] Running deepconsensus results in "free(): invalid pointer" error HOT 17
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- Cannot open/create ccs.bam file? HOT 6
- vRAM limit HOT 1
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- OSError: error -3 while reading file HOT 8
- normal pass / fail rate? HOT 2
- KeyError HOT 5
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- Optimizing runtime on HPC HOT 2
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