Comments (5)
miesav
commented on May 20, 2024
1
Ran into this as well. This worked so far after running the download scrips:
ln -s mgy_clusters_2018_12.fa mgy_clusters_2018_08.fa
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xiaoyongzhu
commented on May 20, 2024
You might want to copy and rename mgy_clusters.fa to mgy_clusters_2018_08.fa. This seems to be a small bug since Deepmind have updated some of the names of the files
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joemin
commented on May 20, 2024
it looks like the provided download script downloads mgy_clusters_2018_12.fa instead of mgy_clusters_2018_08.fa. DeepMind should probably either avoid public-facing versioned naming or update their scripts.
a fix in addition to the one that @miesav provided is to change line 60 in docker/run_docker.py from
DOWNLOAD_DIR, 'mgnify', 'mgy_clusters_2018_08.fa')
to
DOWNLOAD_DIR, 'mgnify', 'mgy_clusters_2018_12.fa')
which worked for me!
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joemin
commented on May 20, 2024
PR is open for this now:
#68
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tfgg
commented on May 20, 2024
Fixed by 20a7057 - apologies for the typo.
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