Comments (4)
yamule
commented on June 11, 2024
It seems that the MSA is too large.
How about using --reduced_dbs option?
from alphafold.
sappigekip
commented on June 11, 2024
I have the exact same issue. using the reduced dbs option worked, and now i get all the outputs. but does anyone have an idea on how to get all the outputs with the full dbs? can we limit the MSA in the commands or something?
from alphafold.
tcoates5
commented on June 11, 2024
Based on the last dive I did, titin seemed to be causing the issues. One option would be to remove it from the database.
from alphafold.
sappigekip
commented on June 11, 2024
I see, then perhaps another question. how do i remove it from the database?
from alphafold.
Related Issues (20)
- ValueError: Minimization failed after 100 attempts. HOT 3
- AttributeError: module 'jax' has no attribute 'linear_util' HOT 4
- I am unable to run the fourth step normally, the following is the error code HOT 5
- Problem with step four in colabpro
- Database Installation
- How to get iPAE
- The definition of bins in Predicted Aligned Error Head(PAE) may be wrong
- Can I use a custom PDB file for multimer prediction
- An error free installation package HOT 1
- FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'
- Open Access
- Downloaded cif file from open access doesn't have secondary structure assignments HOT 2
- Specifying Disulphide bonds to AlphaFold HOT 1
- mmCIF much larger than stated
- The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears
- Using rotamers for mutations HOT 1
- JSON upload to AF3 server saves drafts without running, then gives remaining jobs is 0
- InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform HOT 4
- Alphafold
- alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from alphafold.