Comments (12)
Indeed, that is not good. I'll fix it ASAP.
from jellyfish.
Can you try the develop branch? The issue should be fixed.
from jellyfish.
That was fast! I'll test it out as soon as I get into work.
from jellyfish.
Here I betray my strong CMake bias — what magical invocations must I make to generate a proper configure
script? I tried aclocal && autoconf && automake --add-missing
.
from jellyfish.
The magic call is:
echo abracadabra; autoreconf -fi
from jellyfish.
ahhh, see I was missing the abracadabra
incantation! Any interest in building a tagged tarball (i.e. with a stable GitHub url) that already has the ./configure
script ready to go? Right now I'm pulling from https://github.com/gmarcais/Jellyfish/archive/develop.zip , which, I imagine, is subject to change in content ;P.
from jellyfish.
I will do that. I was hoping to get a feed back from you that it indeed fixed the problem before generating a new version and upload it to the releases.
from jellyfish.
I can confirm that this does, indeed, fix the problem (using Rory's test data). The parser now returns (and RapMap now reports) having observed 5 reads, instead of 0, which is correct.
from jellyfish.
OK, the new distribution tarball is ready in the releases(https://github.com/gmarcais/Jellyfish/releases).
Thanks for the bug report.
from jellyfish.
Fantastic. Thanks, Guillaume!
from jellyfish.
Thanks!
from jellyfish.
Is it known how far back this bug has existed?
from jellyfish.
Related Issues (20)
- standalone C++ API for lock-free concurrent hashmap? HOT 2
- Implementing to count ambiguous bases
- Gzipped fastq files HOT 1
- strange error with query HOT 3
- build failure with gcc-12 HOT 2
- tests/swig_perl flaky - possibly hardware dependent
- Performance regression in Jellyfish 2.3.0
- Is there any way to count kmer and get histo on multi-hosts?
- How to get the version of jellyfish HOT 1
- Package to read in binary .jf output file in python? HOT 2
- Where can I find the 2.0 version of Jellyfish?
- Dramatic output difference between version 2.2.10 and 2.3.0
- out of memory? HOT 1
- kitsune and jellyfish error "Bloom filter file is truncated" HOT 1
- mer_dna.hpp: line 84 HOT 1
- kff to jff
- Difference between reading concatenated PE reads and merging paired end .jf outputs independently
- Count both strands' kmer sets
- Can the query subroutine support a large number of k-mer inputs simultaneously?
- Has anyone actually compiled jellyfish with bindings? HOT 8
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