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nf-core-sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

nf-core-scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

nf-core-test-datasets

Test data to be used for automated testing with the nf-core pipelines

nf-core-testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

nf-core-tools

Python package with helper tools for the nf-core community.

nf-core-viralrecon

UNDER CONSTRUCTION: Assembly and intrahost/low-frequency variant calling for viral samples

nf-core-website

Code and files for the main nf-core website >>>

pi-sequencer

Lego DNA sequencer with Raspberry pi

pipeline-docs

Docs for QBiC pipelines

porecov

SARS-CoV-2 workflow for nanopore sequence data

qbic-pipelines-bamtofastq

querynator

r-alakazam-feedstock

A conda-smithy repository for r-alakazam.

r-project-template

R project template

rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

root-tissue-analysis

Pipeline for pH analysis of A. thaliana root tissue

sarek-starter-cli

Create tsv input for Sarek pipeline

scrnaseq-downstream

Downstream analysis for single cell RNAseq project

sme

Simulated Molecular Evolution for peptide design

sradownloader

A pipeline to download raw data from SRA

startapp

The START App: R Shiny Transcriptome Analysis Resource Tool

tower-action

GitHub Action to launch a workflow using Nextflow Tower.

vcreport