geodynamics / mineos Goto Github PK

The command:

git clone --recursive https://github.com/geodynamics/mineos.git

works for mineos but fails for the "DEMO" submodule:

Submodule 'DEMO' (git://vcs.geodynamics.org/mineos_data) registered for path 'DEMO'
Cloning into '/Users/andreww/Code/mineos/DEMO'...
fatal: unable to connect to vcs.geodynamics.org:
vcs.geodynamics.org[0: 128.120.246.86]: errno=Connection refused

fatal: clone of 'git://vcs.geodynamics.org/mineos_data' into submodule path '/Users/andreww/Code/mineos/DEMO' failed

It looks like I cannot connect to the git server at vcs.geodynamics.org (which is an alias to vcs.cse.ucdavis.edu). I guess this is a defunct server (or a server not behind a firewall or something). I see that the demo data is in the source (.tgz) file but is relatively large.

Is it worth putting a copy of the demo data somewhere else (e.g. on Zenodo)?

When n=81, l=83, the results from minos_bran are NaNs.
This problem occurs when I use the following input:
input model file:
../models/prem_noocean.txt
output file:
prem_noocean_S
eigenfunction file (output):
eprem_noocean_S
enter eps and wgrav
1.E-12 200.
enter jcom (1=rad;2=tor;3=sph;4=ictor)
3
enter lmin,lmax,wmin,wmax,nmin,nmax
83 84 0. 200. 81 81

It seems that in line 2957 of minos_bran.f, the denominator of a2 is zero. The same case
for a1.
The NaN value of wtry is then given to we(2) (Line 209), which cause infinite loop for the next degree l=84.

I'd really appreciate it if someone can fix this problem. It'll help me a lot. Thanks.

Hi everyone,

I try to compute synthetic seismogram for receiver's place at depth 0, 50,100...300km, but seismogram is same.
I put these depths in .sitechan file and elev is 0.0 in all case.
I was wondering, if this parameter is implemented in the code or I am doing something wrong.

Any suggestion!

Regards
Satish

Hi there,

Recently I'm using the latest mineos1.0.2 for Mac and also windows version to calculate the phase velocity for fundamental mode Rayleigh waves. And I found that it does not working for some long period modes even though in the mineos manual it claims "works fine for low frequency application". Specifically, for the mode 000S029 it could not calculate the phase velocity.
One weird thing is on the "play_mineos" website "http://stuplots.geophys.uni-stuttgart.de/~plots/Modes/modes.html", it can give the right answer.
Could someone help identify the where the problem come from? Thanks.

Zheng Xing

Hi there,
When I clone this repository by

git clone --recursive https://github.com/geodynamics/mineos.git

It works for Mineos but fails for DEMO, and it shows

Submodule 'DEMO' (git://vcs.geodynamics.org/mineos_data) registered for path 'DEMO'
Cloning into '/media/junliu/mineos/test/mineos/DEMO'...
fatal: Unable to look up vcs.geodynamics.org (port 9418) (Name or service not known)
fatal: clone of 'git://vcs.geodynamics.org/mineos_data' into submodule path '/media/junliu/mineos/test/mineos/DEMO' failed
Failed to clone 'DEMO'. Retry scheduled

It is the same issue as #9, but it seems to be caused by a different reason. I tried to clone the repository directly by

git clone [email protected]:mineos_data

and it shows

Cloning into 'mineos_data'...
[email protected]: Permission denied (publickey,hostbased).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

So I guess I don't have the right to access the repository. I also check the website of Geodynamics, but it ends up with this repo after searching. Is there any way to get the DEMO data (Such as Zenodo)?

I can not run the ./configure successfully.

Felixs-iMac:mineos-1.0.2 felix$ ./configure FC=ifort
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./aux-config/install-sh -c -d
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether the Fortran 77 compiler works... no
configure: error: in /Users/felix/Documents/DOCTORADO/mineos-1.0.2': configure: error: Fortran 77 compiler cannot create executables See config.log' for more details

I thought that ifort would fix the F77 issue. How can I fix it? I cannot find a F77 version (all that I find is related to gfortran).

Thanks for your aid

When distributing software using the GNU autotools system, it is usual to also distribute the configure script so that end-users don't need to install the whole autotools system themselves. Currently the repo does not include configure, so the installation instructions in INSTALL are not correct and can't be followed.

I managed to build by trying various combinations of autoreconf, autoconf, and automake --add-missing, but most users will not have much experience with this. My own attempts still throw errors along the way, and I don't think I know enough m4 to send a PR to fix those.

One solution to including configure more easily might be a git pre-commit hook.

(If interested, I can separately file a ticket explaining the errors an warnings I experience in running autoconf to build the configure script.)