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This is an automated web scraper/data extractor for the 1000 Genomes project found here - https://www.internationalgenome.org/ it uses the coding language Python 3.9 with the Selenium Web Driver and Pandas packages. This script will aid in automating the extraction of VCF and FastQ files from their database.

License: GNU General Public License v3.0

1000_genomes_project_web_scraper's Introduction

1000_Genomes_Project_Web_Scraper

This is an automated web scraper/data extractor for the 1000 Genomes project found here - https://www.internationalgenome.org/ it uses the coding language Python 3.9 with the Selenium Web Driver and Pandas packages. This script will aid in automating the extraction of VCF and FastQ files from their database.

  1. Get Started by installing the Selenium and Pandas packages for python 3.X: pip install selenium pip install pandas

  2. Add an output CSV file.

  3. Run the Script.

NOTES: The script isn't fully functional yet and still in development. Please feel free to contribute to the project. There are a couple of simple additions needing to be made to make the script run perfectly.

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