Comments (2)
This GNU Guix package passes tests: https://gitlab.com/genenetwork/guix-bioinformatics/blob/5a9fa677517f1708e21ee14dcbea59ae4ec7ce08/gn/packages/gemma.scm#L64
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With the one-step (GNU Guix) binary installer we have now there is no real reason to use conda. Besides our version is highly optimized for OpenBlas. Question is whether this is worthwhile including as a compile or binary install. I leave it for someone else to pursue. Closing for now.
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Related Issues (20)
- Test failures for 0.98.4 on CentOS 7 HOT 1
- Should I use the "beta" estimates as the allelic effect size?
- GSL ERROR: matrix is singular in lu.c at line 147 errno 1
- compute fix effect
- How to find Significant SNPs from the results of GEMMA
- GEMMA ERROR
- The gemma model choose problem HOT 1
- All snp have missing genotype for all individuals and will be ignored error
- -lmm 9 option leads to bug in mvlmm model HOT 1
- Longitudinal Phenotype data HOT 2
- Phenotype file format for eQTL analysis
- Errors when running GEMMA in an SoS step but ok in command line HOT 1
- FAILED error HOT 1
- Issue with GEMMA-Wrapper HOT 1
- Parsing input file '' failed in function AnalyzeBimbamGXE
- Enforce failed for number of analyzed individuals equals 0. in src/param.cpp at line 2073 in ProcessCvtPhen HOT 2
- long haplotype as population structure
- basic usage doesn't work
- Gemma run-time for Estimate Relatedness Matrix calculation
- very low number of analyzed SNPs/var
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