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Related Issues (20)
- Parsing input file '' failed in function AnalyzeBimbamGXE
- Enforce failed for number of analyzed individuals equals 0. in src/param.cpp at line 2073 in ProcessCvtPhen HOT 2
- long haplotype as population structure
- basic usage doesn't work
- Gemma run-time for Estimate Relatedness Matrix calculation
- very low number of analyzed SNPs/var
- The input files includes 26 linkage groups but the output files only includes 22 linkage group
- Categorical covariates
- Pve is .999
- gemma-wrapper:279:in `<main>': Expected GEMMA -a genotype file switch (RuntimeError)
- Got a nan in the p-value results HOT 1
- gsl: newton.c:88: ERROR: function value is not finite 3.08%
- GSL ERROR: function value is not finite in brent.c at line 58 errno 9
- WARNING: Brent did not converge
- Why the diagonal of relatedness matrix is not equal to 1 or a constant value?
- The problem of filtering snp parameters
- ERROR: Enforce failed for Problem reading FAM file (phenotypes do not match geno file) in src/gemma_io.cpp at line 600 in ReadFile_fam GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
- Identical P-Values at end of run HOT 1
- BIMBAM format (preferred)
- ##ERROR: FAILED: Parsing input file 'mikk_small_hapVariants_updated_noheaders.csv' failed in function ReadFile_geno in src/gemma_io.cpp at line 744, for GEMMA 0.98.5 (2021-08-25) by Xiang Zhou, Pjotr Prins and team (C) 2012-2021
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