gdko / scubat2 Goto Github PK

/usr/local/lib/python2.7/dist-packages/Bio/SearchIO/__init__.py:211: BiopythonExperimentalWarning: Bio.SearchIO is an experimental submodule which may undergo significant changes prior to its future official release.
  BiopythonExperimentalWarning)
Program started: Wed Oct  5 15:33:18 2016
Processing BLAST xml...100.00%
Calculating stats...100.00%
Creating connections...100.00%
Traceback (most recent call last):
  File "/home/philipp/bioProgs/SCUBAT2/SCUBAT_v2.py", line 582, in <module>
    scaffold_file.write('>Path_' + str(i) +'_' + str(path) + '\n' + string_of_ns.join([getContig(contigs,node) for node in path]) + '\n')
  File "/home/philipp/bioProgs/SCUBAT2/SCUBAT_v2.py", line 272, in getContig
    return str(Seq(ctgs[node[:-2]]).reverse_complement())
KeyError: 'scaffold1838|size12660'