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argparse

Argument Parser for Modern C++

asciimatics

A cross platform package to do curses-like operations, plus higher level APIs and widgets to create text UIs and ASCII art animations

auturing

A simple turing machine in python

bamtools

C++ API & command-line toolkit for working with BAM data

bedops

:microscope: BEDOPS: high-performance genomic feature operations

bleties

IES retention analysis from PacBio CCS reads

cigarfilter

A fast C++ tool to filter .bam files by CIGAR string

cmake-conan

CMake wrapper for conan C and C++ package manager

doi2bib2

elixir-workshop-21

Nextflow workflow workshop 2021

entt

Gaming meets modern C++ - a fast and reliable entity component system (ECS) and much more

example-.bam-filter-c-

Minimal example to filter .bam files in C++

fltk-rs-examples

A small collection of modular UI features made with fltk-rs.

gdrivedl

Google Drive Download Python Script

genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

glsmac

Open-source SMAC (Sid Meier's Alpha Centauri) engine

gwqs

:exclamation: This is a read-only mirror of the CRAN R package repository. gWQS — Generalized Weighted Quantile Sum Regression

imgui_markdown

Markdown for Dear ImGui

implot

Immediate Mode Plotting

kmers_removal

Small example of how a list of kmers can be removed from a genome assembly

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

mgzip

A multi-threading implement of Python gzip module

multipy

Multiple hypothesis testing in Python

ogame-origin-epic-blue

Improved ogame.org epic blue theme for http://ogame1304.de/ Origin

pandarallel

A simple and efficient tool to parallelize Pandas operations on all available CPUs

parties

PARamecium Toolbox for Interspersed DNA Elimination Studies

pbbam

PacBio BAM C++ library

pcawg3-rnaseq-align-star

Scripts for RNA-Seq alignments using STAR

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

poibin

Poisson Binomial Probability Distribution for Python