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imagingsuite

Sources for imaging related tools

iterative_tomographic_reconstruction_algorithms

laminocupy-cli

miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

ml_phase_contrast_reconstruction

X-ray phase contrast image reconstruction using machine learning method

multi-channel-x-ray-ct

Software supporting "Joint image reconstruction method with correlative multi-channel prior for X-ray spectral computed tomography" publication in Inverse Problems journal

ndtomo

The nDTomo software suite contains GUIs for the acquisition, pre-processing and analysis of X-ray chemical tomography data

open_ia

A tool for the visual analysis and processing of volumetric datasets, with a focus on industrial computed tomography.

peakaboo

XRF Analysis Software

polycap

Polycapillary X-ray raytracing

popcorn

psychopy

Main repository of PsychoPy

pyflowopencv

OpenCv Wrapper for PyFlow

pymca

PyMca Toolkit git repository

pyqtgraph

Fast data visualization and GUI tools for scientific / engineering applications

pyro-nn

Python Reconstruction Operators in Neural Networks. High level python API for PYRO-NN-Layers

pyro-nn-layers

Implementation of reconstruction operators in CUDA for Tensorflow for the PYRO-NN Framework

python_for_microscopists

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

pyxrf

Fluorescence fitting GUI.

recast3d

Real-time visualization tool for tomographic data.

rtk

Reconstruction Toolkit

sarepy

Numerical techniques for ring artifact removal in tomography.

savu

Tomography Reconstructon Pipeline

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

sim-xrf

XRF spectrum simulation

softx_2018_161

The set of CPU/GPU optimised regularisation modules for iterative image reconstruction and other image processing tasks. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711018301912

softx_2019_163

Toolbox for tomographic reconstruction. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019301669

softx_2019_193

Digital Image Correlation in Python. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019301967

softx_2019_363

X-Ray Calc: A Software for the Simulation of X-ray Reflectivity. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019303681

source-size-calculator

Tools for source size calculation from 2D Talbot images