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a-fodfs-recursive-net's Introduction

a-fODFs recursive net

Code for paper "Unsupervised Deep Learning-based Asymmetric Fiber Orientation Distribution Functions Estimation on diffusion MRI" framework

[Notice]

Partial codes are coming soon...

Setup

The main environment is:

  • cuda 11.3
  • torch 1.11.0
  • nibabel 4.0.2
  • PyGSP 0.5.1 (pip install git+https://github.com/epfl-lts2/pygsp.git@39a0665f637191152605911cf209fc16a36e5ae9#egg=PyGSP)
  • dipy 1.7.0
  • scipy 1.8.0

Datasets

You need to create a folder containing the dmri data. The file name in this folder must be:

  1. dmri image: dmri_data.nii.gz
  2. bvals file: bvals.bvals
  3. bvecs file: bvecs.bvecs

Train Model and Inference on your data

bash estimate.sh

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