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U fiber analysis: a toolbox for automated quantification of U-fibers and white matter hyperintensities

License: Apache License 2.0

MATLAB 80.49% Shell 18.54% Python 0.97%

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ufa_toolbox's Issues

TypeError: 'float' object cannot be interpreted as an integer in wm_register_to_atlas_new.py when using U fiber clustering button.

Description:

### Description
I'm experiencing an error when using the UFA toolbox and clicking the U fiber clustering button. The error message indicates that a `float` object is being interpreted as an integer in the `wm_register_to_atlas_new.py` script.

### Error Message

Traceback (most recent call last):
File "/usr/local/bin/wm_register_to_atlas_new.py", line 375, in
main()
File "/usr/local/bin/wm_register_to_atlas_new.py", line 348, in main
register.iterate()
File "/usr/local/lib/python3.10/dist-packages/whitematteranalysis/congeal_to_atlas.py", line 111, in iterate
dirname = f"iteration_{self.total_iterations:05d}sigma{self.sigma:05d}"
ValueError: Unknown format code 'd' for object of type 'float'


### Additional Context
- This issue occurs with the latest version of `whitematteranalysis` (0.4.0).
- Environment details:
  - Python: 3.10
  - OS: Windows 11 using Ubuntu Docker

### Related Issues
I found a similar issue in [Issue #112](https://github.com/SlicerDMRI/whitematteranalysis/issues/112), which suggested updating to a newer version. However, I am already using the latest version (0.4.0) and the issue persists.

Please take a look and let me know if there's any fix or workaround.

Thank you!

Questions on Re-Parcellating WMH, Processing Multiple Subjects, and Extracting Fasciculus in UFA Toolbox

Description

I have a few questions regarding the use of the UFA toolbox and would appreciate any guidance:

How can I re-parcellate WMH areas using a different atlas, such as aparc+aseg?
Is there a way to process multiple subjects at once with the UFA toolbox, or do I need to handle each subject individually?
How can I extract fasciculus instead of U-fiber using the toolbox? Any tips or resources would be very helpful.

Thank you for your assistance!

No fibers found in input polydata & No Points element available in U-fiber clustering

Hello,

I have checked the 'WMA package bug fix' you provided earlier. Thanks to your help, I was able to resolve the initial bug and generate new outputs. However, I have now encountered another issue while using the U-fiber clustering feature in the UFA toolbox. The process fails with errors indicating that no fibers are found in the input polydata and that there are no points available in the input files.

Errors:

<filter.py> No fibers found in input polydata.
Subject 73 / 74 ID: T_UF_left
2024-07-17 02:21:55.182 (  93.685s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x54abee0): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
...
<wm_quality_control_tractography.py> Final step: rendering all vtk files together.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/
2024-07-17 02:26:22.599 (   0.349s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x299dd20): No Points element available in first piece found in file. Reading file may fail.
...

Additional Steps Taken:
I followed the instructions to install Slicer Extensions:

Opened 3D Slicer and tried to search for the SlicerDMRI Extension. When the search function didn't work, I installed SlicerDMRI from a file.
Initially, the installation didn't seem complete because the SlicerDMRI icon was missing (it should appear as a puzzle piece on a blue background).
I clicked update, and the installation completed successfully with the correct SlicerDMRI module icon.
I was then prompted to install an additional extension, UKFTractography. I installed it, but I'm not sure if it installed correctly.
Could the issue be related to the incomplete installation of the UKFTractography extension? Any guidance or fixes to address this issue would be greatly appreciated.

full version:

<filter.py> No fibers found in input polydata.
Subject 68 / 74 ID: T_TF_right
2024-07-17 02:21:52.112 (  90.613s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x3bc9900): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_left_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_right_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_inf_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_sup_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_ant_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right
tract_QC_T_TF_right/view_post_T_TF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TF_right/view_multiple_T_TF_right.html
<filter.py> No fibers found in input polydata.
Subject 69 / 74 ID: T_TO_left
2024-07-17 02:21:52.679 (  91.181s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x54c7df0): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_left_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_right_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_inf_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_sup_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_ant_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left
tract_QC_T_TO_left/view_post_T_TO_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_left/view_multiple_T_TO_left.html
<filter.py> No fibers found in input polydata.
Subject 70 / 74 ID: T_TO_right
2024-07-17 02:21:53.277 (  91.780s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x2de7c50): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_left_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_right_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_inf_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_sup_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_ant_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right
tract_QC_T_TO_right/view_post_T_TO_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TO_right/view_multiple_T_TO_right.html
<filter.py> No fibers found in input polydata.
Subject 71 / 74 ID: T_TP_left
2024-07-17 02:21:53.872 (  92.375s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x54abee0): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_left_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_right_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_inf_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_sup_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_ant_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left
tract_QC_T_TP_left/view_post_T_TP_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_left/view_multiple_T_TP_left.html
<filter.py> No fibers found in input polydata.
Subject 72 / 74 ID: T_TP_right
2024-07-17 02:21:54.461 (  92.964s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x54abee0): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_left_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_right_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_inf_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_sup_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_ant_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right
tract_QC_T_TP_right/view_post_T_TP_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_TP_right/view_multiple_T_TP_right.html
<filter.py> No fibers found in input polydata.
Subject 73 / 74 ID: T_UF_left
2024-07-17 02:21:55.182 (  93.685s) [    7F61C321E740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x54abee0): No Points element available in first piece found in file. Reading file may fail.
<filter.py> No fibers found in input polydata.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_left_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_right_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_inf_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_sup_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_ant_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left
tract_QC_T_UF_left/view_post_T_UF_left.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_left/view_multiple_T_UF_left.html
<filter.py> No fibers found in input polydata.
Subject 74 / 74 ID: T_UF_right
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
Multiple views for individual subject
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_left_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_right_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_inf_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_sup_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_ant_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right
tract_QC_T_UF_right/view_post_T_UF_right.jpg
/usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/tract_QC_T_UF_right/view_multiple_T_UF_right.html
<wm_quality_control_tractography.py> Final step: rendering all vtk files together.
<render.py> Saving rendered views to disk: /usr/local/MATLAB/R2019b/toolbox/UFA_toolbox/WMA_clustering_SWM/QC/AnatomicalTracts/
2024-07-17 02:26:22.599 (   0.349s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x299dd20): No Points element available in first piece found in file. Reading file may fail.
2024-07-17 02:26:22.608 (   0.357s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x299dd20): No Points element available in first piece found in file. Reading file may fail.
2024-07-17 02:26:22.654 (   0.404s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x2b26560): No Points element available in first piece found in file. Reading file may fail.
2024-07-17 02:26:22.661 (   0.410s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x2b26560): No Points element available in first piece found in file. Reading file may fail.
2024-07-17 02:26:22.667 (   0.416s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x2b26560): No Points element available in first piece found in file. Reading file may fail.
2024-07-17 02:26:22.672 (   0.422s) [    7F1CBD150740]vtkXMLUnstructuredDataR:404   WARN| vtkXMLPolyDataReader (0x2b26560): No Points element available in first piece found in file. Reading file may fail.

Thank you.

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