ganguvamshi Goto Github PK

hackerschool-git-workshop

NUS hacker school github workshop

handyscripts

Repo for commonly used template scripts

hpc-installers

installation files for hpc softwares

iris_flask_docker

login-basics

The Login Basics is an implementation of Android Login with Facebook, Google Plus (G+) and your own app login.

mel-ngs

ngs code for mel lab

mynotes

nf-fastqdump

a nextflow project for converting sra to fastq using fastq-dump

oilabs

Source files for OpenIntro Statistics labs

oneliners

Useful bash one-liners for bioinformatics.

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

public-bioinformatics-datasets

Publicly available dataset for bioinformatics and integrative -omics research

pyparallel

parallel computing in Python

pyparallel2

HPC parallel computing in python with Dask

r-and-singularity

Notes on R and Singularity

ray

A high-performance distributed execution engine

sam2counts

Count number of mapped reads per reference in SAM files (often for RNA-Seq experiments)

sam2fpkg

Convert a sam mapping file and gff3 annotation file to find transcriptomic level in microbial transciptomic data sets

samplejobscripts

sample hpc job scripts

seaborn

Statistical data visualization using matplotlib

tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

tensorflow-examples

TensorFlow Tutorial and Examples for beginners

tensorflow-tutorial

Practical tutorials and labs for TensorFlow used by Nvidia, FFN, CNN, RNN, Kaggle, AE

tensorflow_tutorials

From the basics to slightly more interesting applications of Tensorflow

tet_5hmc

ucsc data upload

tftutorials

Contains code for understanding TensorFlow workflow and basics

tljh-wrapsawner

TJLH plugin to use WrapSpawner to spin up both SystemdSpawner and DockerSpawner

ziggyworkshop