galaxy-genome-annotation / chado-schema-builder Goto Github PK

# gmod_load_cvterms.pl -s SOFP load/etc/feature_property.obo
WARNING: If your databse is already populated with cvterms, not running in UPDATE mode (option -u) may cause database conflicts, such as violating unique constraints!
Default for -s: SOFP (specifies the database names for Dbxref objects)
Default for -F: File format set to obo
Connected to database postgres on host localhost.
Parsing the ontology load/etc/feature_property.obo...
Default namespace is feature_property 
....found namespace  'feature_property' 
cv_id = 14
Updating an ontology in the database...
Ontology name: feature_property
Getting all the terms of the new ontology...
***found 6 predicate terms!.
Retrieved 0 terms.
predicate term 'IS_A' already exists with cv_id 4
predicate term 'PART_OF' already exists with cv_id 4
Predicate term RELATED_TO will be stored later if used as a relationship in an ontology term
predicate term 'REGULATES' already exists with cv_id 4
predicate term 'POSITIVELY_REGULATES' already exists with cv_id 4
predicate term 'NEGATIVELY_REGULATES' already exists with cv_id 4
Getting all the terms of the current ontology...
Indexing terms and relationships...
Determining which terms are new...
Determine which terms are not in the file anymore...
 
                      These terms will be set to obsolete in the database
Inserting and updating terms...
Updated 0 existing terms, inserted 0 new terms!
Parsing out the relationships...
Looking at relationships in file.

Looking at relationships in database.
Relationships not in the file...

feature_property : 0 novel relationships among 0 were found and stored.
Committing! 
 If you are using cvtermpath you should now run gmod_make_cvtermpath.pl . See the perldoc for more info.